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Download Bioinformatics Software

ALICAO - Contact-based Sequence Alignment
ALICAO.zip Program: zipped archive; extract with 'unzip'
getcont.zip Program to generate contact map from (single chain) PDB file: zipped binary; extract with 'unzip'
example.zip Example: zipped archive; extract with 'unzip'

ALISS - Unified Sequence and Structure Alignment
aliss.zip Program and examples: zipped archive; extract with 'unzip'

CAO contact substitution matrices
CAO50   CAO80   CAO100   CAO120   CAO200
Example implementation of CAO80

MPI code for parallelized multiple alignment
mpicode

REPRO - Protein repeats analysis
repro.zip Program and exchange matrices: zipped archive; extract with: 'unzip'

TRUST repeat detection method
trust.tgz Program: tar gzipped archive; extract with: 'tar zxvf'


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