K2N: a service to get from knotted to nested RNA
structures. This site provides access to a variety of methods for pseudoknot
- Small set of pseudoknotted base pairs (bpseq) (ct)
- Larger set of pseudoknotted base pairs (bpseq) (ct)
If you use our method, please cite:
Sandra Smit, Kristian Rother, Jaap Heringa, and Rob Knight.
From knotted to nested RNA structures: a variety of computational methods for
RNA (2008) 14(3):410-416.
[Online supplementary material]
This code is no longer actively maintained. Please, email me if you have any questions.