PRC Results

The graph below show the distribution of the hits over your query. The "HMM space" graph shows the hits using the coordinates from the PRC output, while the "alignment" space" graph shows the hits based on alignment coordinates. The latter graph can be different as columns present in the alignments can be absent from the Hidden Markov Model.
If you mouse over a hit its score and E-value appear; if you click on a hit you jump to the corresponding alignments.
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PRC hit table

hit (hmm2)	description		co-emis	simple	reverse	E-value
smart00093	SERPIN: SERine Proteinase INhibitors;		446.2	446.2	433.2	1.4e-182
smart00700	JHBP: Juvenile hormone binding protein domains in i...	>>	20.7	18.7	7.5	0.49

Alignments

Length=378 Score = 433.2, Expect = 1.4e-182 Match = 363/396 (92%), Insert = 0/396 (0%), Delete = 33/396 (8%) Query 17 MMMMMMMMMDMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM~MD 75 Sbjct 1 MMMMMMMMM~MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMDM~ 58 Query 76 DDDDDDMMMMMMMMMMMMMMMMMM~MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM 134 Sbjct 59 ~~~~~~MMMMMMMMMMMMMMMMMMDMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM 112 Query 135 MMMMMDM~MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM 193 Sbjct 113 MMMMM~MDMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM 171 Query 194 MMMMMMMMMMMMMMMMMMMMMDMMMM~MMMDDDMMMMMMMM~MMMMMMMMMMMMMMMMMM 251 Sbjct 172 MMMMMMMMMMMMMMMMMMMMM~MMMMDMMM~~~MMMMMMMMDMMMMMMMMMMMMMMMMMM 227 Query 252 MMMMMM~~~MMMMMMMMMMMMMMMMMDMM~MMMMMMMMMMMMMMMMMM~~MMMMMM~MMM 304 Sbjct 228 MMMMMMDDDMMMMMMMMMMMMMMMMM~MMDMMMMMMMMMMMMMMMMMMDDMMMMMMDMMM 286 Query 305 MMMMMMMMM~MMDMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMDMMM 363 Sbjct 287 MMMMMMMMMDMM~MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM~MMM 344 Query 364 ~~MMMDDMMMMMMMMMMMMMMMMMMMMMMMMMMMMM 397 Sbjct 345 DDMMM~~MMMMMMMMMMMMMMMMMMMMMMMMMMMMM 378

Aligned alignments:

ANGT_MOUSE 106 FRMYKM.LNEA.GSGA:::SG:AILSPPALFGTLVSFYLGSLDPTASQLQTLLDVPVKE: 158 Consensus 17 FSLYKQlLVESkKSPD:::KN:IFFSPVSISTALAMLSLGAKGDTRTQILEGLGFNLTE: 71 ++++++ +++ ++++ ++ +++++++++++++++++++++++++++++++++++++ Consensus 1 FDLYKE:LAK~:ESPDraaKNaIFFSPVSISSALAMLSLGAKGSTATQILEVLGFNLTEg 57 lcl|consen 1 FDLYKE:LAS~:ESPD...KN.IFFSPVSISSALAMLSLGAKGSTATQILEVLGFNLTE. 52 ANGT_MOUSE 159 ::::::::::::::::::::::::::::::GDCT~::SRLDgHKvLaALRAVQGLLVTQG 185 Consensus 72 ::::::::::::::::::::::::::::::TPEA~::ERADqCGvLaAIHQGFQHLLQTL 98 ++++ + ++++++++++++ Consensus 58 ngctpenpenfsgcdfaqqiqkekypsaeaTSEAEadD~~~:~~:~:~IHQGFQHLLHEL 107 lcl|consen 53 ..............................TSEA-..D~~~:~~:~:~IHQGFQHLLHLL 69 ANGT_MOUSE 186 gSSSQ::::TP~LLQSIMVGLFTAPGFRLKHSFVQSL-ALFTP:ALfpRSLDLSTDP~VL 237 Consensus 99 gNQPD::::DE~LQLTTGNALFVDKSLKLLDEFLEDVKKLYQS:EAfpFSVDFQDAP~EE 151 ++++ ++ +++++++++++++++++++++++++++++++ ++ +++++++ + ++ Consensus 108 :NRPDgadsNEQLQLKTANALFVEKSLKLLDSFLEDIKKLYGAtEA::FSVDFSD~PAEE 163 lcl|consen 70 :NRPD....NG-LQLKTANALFVDKSLKLLDSFLEDIKKLYGA.EV::QSVDFSD~PEEE 119 ANGT_MOUSE 238 ATEKINRFIKAVTGWKMNLPLEGVSTD-:-.STLLFNTYVHFQGTMRGFSQLPGVHE.-- 290 Consensus 152 AKKQINDYVEKQTQGKIVDLLSDGSLDS:DlTVLVLVNYIYFKGKWKKPFDPENTREsED 210 ++++++++++++++++++++++++++++ + ++++++++++++++++++++++++++ ++ Consensus 164 AKKQINDWVKKKTQGKIKDLLSDGSLDPdD:TRLVLVNAIYFKGKWKTPFDPENTREsED 222 lcl|consen 120 AKKQINSWVKKKTQGKIKDLLSD--LDP.D:TRLVLVNAIYFKGKWKTPFDPENTRE.ED 174 ANGT_MOUSE 291 FWVDNSISVSVPMI-SGTG~NFQ---HWSDAQNN~:::::FSVTCVPLGER....-A::: 331 Consensus 211 FHVDKKTTVKVPMMKNQLG~TFRYTEYFRDEELS~:::::CKVLELPYKGNhdkrAT::: 260 ++++++++++++++ ++++ +++ ++++++++ +++++++++++ ++ Consensus 223 FYVDETTTVKVPMM~SQTGMTFN~~~YGHDEELNGeagggCQVLELPYKGD::::NAkrq 274 lcl|consen 175 FHVDETTTVKVPMM~SQTGRTFR~~~YGRDEELN-.....CQVLELPYKG-::::NA... 216 ANGT_MOUSE 332 :TLLLIQP....HCTS~:~~DLDRVEALI.FRNDLLTW-.IE:~NPPPR::::AI.RLTL 372 Consensus 261 :AMFILLPddiePDEG~:~~KLQQVEAALkTPETLRKWTsLK:~NLTPR::::SVgELYL 309 +++++++ ++++ +++++++++ ++++++++ ++ +++++ ++ ++++ Consensus 275 fSMLFILP::::DEGEDeSTGLETVEKAL:TPETLKKW~:TKpDSLTKRnfykSV:ELYL 326 lcl|consen 217 .SMLIILP::::DEG--.--GLETVEKAL:TPETLKKW~:TK.-SMTKR....SV:ELYL 256 ANGT_MOUSE 373 PQLEIRG~~SYNL.QD~::::::LLAEDKLPTLLG~AE-ANLSNIG..DT.:-NPRVGEV 415 Consensus 310 PKFSISG~~TYDLeKD~::::::VLPKLGITDLFS~NQKADLSGITaeEDs:EPLKVSQA 358 +++++++ ++++ ++ ++++++++++++ ++ +++++++ ++ ++++++++ Consensus 327 PKFKLEISGSYDL:KDPkinlkhVLEKLGITDLFSKNK~ADLSGIS::EDgaKDLKVSKV 382 lcl|consen 257 PKFKLEI--SYDL:KD-......VLEKLGITDLFS-NK~ADLSGIS::ED..KDLKVSKV 300 ANGT_MOUSE 416 LNSILLELKAGEEEQPTTSVQQPGSPEALD.::::::::::::::::::::::::::::: 445 Consensus 359 VHKAVLEVDEEGTEAAAATGAEIIPRSSLPl::::::::::::::::::::::::::::: 389 ++++++++++++++++++++++++++ +++ Consensus 383 VHKAVLEVNEEGTEAAAATGVIAVPR~SLPLakevpavvkvpmkakevpavvkvpmntke 441 lcl|consen 301 VHKAFLEVNEEGTEAAAATGVIAVPR~SLP-............................. 329 ANGT_MOUSE 446 ::::::::::::~------VTLSSPFLFAIYEQDSGTLHFLGRVNNP 473 Consensus 390 ::::::::::::~PTLHVEFKFDRPFLFLIRDNPTGSILFMGKVVNP 423 +++ +++++++++++++++++++++++++++++ Consensus 442 vpvvvkvpmntkEPPP~~EFKFDRPFLFLIRDNPTGSILFMGKVVNP 486 lcl|consen 330 ............--PP~~EFKANRPFLFLIRDNPTGSILFMGKVVNP 360

JHBP
Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.

Length=239 Score = 7.5, Expect = 0.49 Match = 34/40 (85%), Insert = 2/40 (5%), Delete = 4/40 (10%) Query 273 MMDMMMM~MMMMMMMMMMMMMMMMMMMMMMM~~MMMMMMM 309 Sbjct 87 MM~MMMMDMMMMMMMMMMMMMMMMMMMMMMMDDMMIIMMM 123

ANGT_MOUSE 358 TW-.IENP~:::PPRAI.RLTLPQLEIR:GSYNL.QDL~::::::~LAEDKLP 393 Consensus 292 KWTsLKNL~:::TPRSVgELYLPKFSIS:GTYDLeKDV~::::::~LPKLGIT 331 ++ ++++ +++++ ++++++++++ +++++ +++ ++ +++ Consensus 91 KM~:DLKDLtrtKKIEL:KIEFPKLNVKaGDYKL:DGKAdlliaeLLL~~GLP 137 lcl|consen 82 KM~:DLKD-...KKIEL:KIEFPKLNVK.GDYKL:DGK-......-LL~~GLP 115

PRC Results

Distribution of hits

PRC hit table

Alignments

Aligned alignments:

Aligned alignments: