sidebar-main
title
griff
banner-button_0 banner-button_Layer-7 banner_button_03 banner-button_Layer-4 banner-button_05 banner-button_Layer-5 banner-button_07
banner-button_08 banner-button_09 banner-button_10
Bioinformatics Unit banner
   homeoffresearchoffconfoffprogonmemoffpuboffvacofflinkoff
   tabfoot tabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bgtabfoot-bg

TRUST repeat detection method


frog_logo


TRUST is a method for ab-initio determination of internal repeats in proteins. The high sensitivity and accuracy of the method is achieved by exploiting the concept of transitivity of alignments.

Reference: ISMB/ECCB 2004 conference (Glasgow, UK), appeared in Bioinformatics. 2004 Aug 4;20 Suppl 1:i311-i317. PubMed Preprint

Source: Available to download here.
 
Paste in your sequences in FASTA format or


 Options

Select Gap Penalties:

 Open     Extension

Select a substitution matrix:


Force including local alinments in analysis
(relax statistical significance constraints):



Seg low-complexity filtering:


 Submit your job
   

Interface written by Radek Szklarczyk, Victor A. Simossis and Jaap Heringa

(c) IBIVU 2014. If you are experiencing problems with the site, please contact the webmaster.