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YASPIN secondary structure prediction


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YASPIN is a HNN (Hidden Neural Network) secondary structure prediction program that uses the PSI-BLAST algorithm to produce a PSSM for the input sequence, which it then uses to perform its prediction.

Reference: Lin K., Simossis V.A., Taylor W.R. and Heringa J. (2005) A Simple and Fast Secondary Structure Prediction Algorithm using Hidden Neural Networks. Bioinformatics. 21(2):152-9. Abstract
 
Paste in your protein sequence in FASTA format (seq size <= 4000): Help

Or Upload a FASTA file (seq size <= 4000): Help

   Upload a PSSM for your sequence (if applicable): Help
   


Enter a name for your job: Help

Choose a database for PSI-BLAST to use: Help

   Choose the NN you would like to use: Help
   

E-mail me when my job is done at:


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