YASPIN secondary structure prediction

Options Help YASPIN is a HNN (Hidden Neural Network) secondary structure prediction program that uses the PSI-BLAST algorithm to produce a PSSM for the input sequence, which it then uses to perform its prediction. Reference: Lin K., Simossis V.A., Taylor W.R. and Heringa J. (2005) A Simple and Fast Secondary Structure Prediction Algorithm using Hidden Neural Networks. Bioinformatics. 21(2):152-9. (Epub 2004 Sep 17). Abstract

Paste in your protein sequence in FASTA format (seq size <= 4000): Help
Or Upload a FASTA file (seq size <= 4000): Help	Upload a PSSM for your sequence (if applicable): Help
Enter a name for your job: Help
Choose a database for PSI-BLAST to use: Help NR SWISSPROT PDB SCOP10 SCOP20 SCOP25 SCOP30 SCOP35 SCOP40 SCOP50 SCOP70	Choose the NN you would like to use: Help     DSSP-trained STRIDE-trained
(NB: server results have a maximum lifetime of 15 days): Help Also send me the results by email    My email address is

Interface written by Victor A. Simossis and Kuang Lin