DOMAINATION: domain prediction

The recent major upgrade on our compute server, has lead to some configuration issues that turn out to be very hard to resolve. We are still working on this, and hope to have the server back online in the course of this month (June). We apologise again for the inconvenience, and thank you for your continued patience.

DOMAINATION is a method to identify domains in a protein sequence from similarity searches using PSI-BLAST. The identified domains are used in individual PSI-BLAST searches to improve detection of distant homologous sequences. DOMAINATION iterates until no new domains are found. Supply a protein sequence in FASTA format or enter a UniProt/RefSeq ID. Documentation: introduction to DOMAINATION, including example output. WSDL: SOAP interface available.	Paste in a protein sequence (FASTA format only): or  upload a sequence: or  supply a UniProt/RefSeq ID: Run similarity search on found sequences Rerun query; do not use cached results E-mail address (optional):
The DOMAINATION web server was developed by Bernd Brandt.