# PRC 1.5.5 (PLAN9, SPACE5, ALL_TRANS), compiled on Nov 11 2008 # Copyright (C) 2002-5 Martin Madera and MRC LMB, Cambridge, UK # Freely distributed under the GNU General Public License # # Command : prc -Emax 2 -align prc -algo forward -mode local-local -MMfn dot2 -name posted.hmm /home/ibivu/data/prc/smart.lib librun # Algorithm : forward/backward # Match-match : dot2 # Align mode : local-local # Alignments : prc # Simple stop : 1.5 # Max hits : 100000 # Max E-value : 2.0 # Started : Sun Mar 8 17:54:11 2009 # # E-value fn : n_unrel / (1.0 + exp(lambda*reverse + kappa)) # .. n_unrel : 662 # .. lambda : 0.982001 # .. kappa : -0.147615 # Warning : n_unrel < 1000 means poor statistics! # # hmm1 start1 end1 length1 hit_no hmm2 start2 end2 length2 co-emis simple reverse E-value posted 17 397 397 1 smart00093 1 378 378 446.2 446.2 433.2 1.4e-182 posted 273 309 397 1 smart00700 87 123 239 20.7 18.7 7.5 0.49 # END