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SeRenDIP PPI interface prediction Resultsnew job |
In the table below you can see the example P0DTC3 — Name: SARS-CoV-2 Protein 3a — UniProtKB: AP3A_SARS2 . The table contains sequence position, prediction scores and classification based on the default cut-off of 0.5 (above is predicted interaction).
Download raw dataYou can download the output file and the full feature table.
Please cite:
- Qingzhen Hou1, Reza Haydarlou, Bas Stringer, Katharina Waury, Henriette Capel, Sanne Abeln, Jaap Heringa, K. Anton Feenstra SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes Bioinformatics advance 11 May 2021, doi: 10.1093/bioinformatics/btab321 1Department of Biostatistics, School of Public Health & National institute of health data science of China; Shandong 250002, P. R. China
- Qingzhen Hou1, Paul De Geest, Christian Griffioen, Sanne Abeln, Jaap Heringa, K. Anton Feenstra. SeRenDIP: remastered alignment profiles for fast and accurate predictions of PPI interface positions. Bioinformatics 35, pp 4794–4796, 2019, doi: 10.1093/bioinformatics/btz428
13BIO-BioInfo – BioModeling, BioInformatics & BioProcesses, Université Libre de Bruxelles- Qingzhen Hou, Paul De Geest, Wim F. Vranken, Jaap Heringa and K. Anton Feenstra
Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx005
Color better than threshold:
Sequence Combined Prediction Pos AA Model Pred 267 of 267 rows match filter(s) 5 M 0.516 I 6 R 0.564 I 7 I 0.468 NI 8 F 0.542 I 9 T 0.530 I 10 I 0.540 I 11 G 0.482 NI 12 T 0.518 I 13 V 0.530 I 14 T 0.518 I 15 L 0.496 NI 16 K 0.518 I 17 Q 0.546 I 18 G 0.518 I 19 E 0.492 NI 20 I 0.496 NI 21 K 0.458 NI 22 D 0.502 I 23 A 0.496 NI 24 T 0.450 NI 25 P 0.466 NI 26 S 0.446 NI 27 D 0.514 I 28 F 0.516 I 29 V 0.494 NI 30 R 0.556 I 31 A 0.528 I 32 T 0.566 I 33 A 0.558 I 34 T 0.566 I 35 I 0.588 I 36 P 0.586 I 37 I 0.516 I 38 Q 0.540 I 39 A 0.554 I 40 S 0.512 I 41 L 0.528 I 42 P 0.584 I 43 F 0.564 I 44 G 0.494 NI 45 W 0.512 I 46 L 0.508 I 47 I 0.494 NI 48 V 0.442 NI 49 G 0.398 NI 50 V 0.390 NI 51 A 0.424 NI 52 L 0.402 NI 53 L 0.426 NI 54 A 0.446 NI 55 V 0.444 NI 56 F 0.426 NI 57 Q 0.530 I 58 S 0.568 I 59 A 0.520 I 60 S 0.550 I 61 K 0.576 I 62 I 0.496 NI 63 I 0.528 I 64 T 0.552 I 65 L 0.520 I 66 K 0.498 NI 67 K 0.580 I 68 R 0.492 NI 69 W 0.512 I 70 Q 0.552 I 71 L 0.516 I 72 A 0.452 NI 73 L 0.482 NI 74 S 0.544 I 75 K 0.510 I 76 G 0.472 NI 77 V 0.480 NI 78 H 0.488 NI 79 F 0.478 NI 80 V 0.482 NI 81 C 0.416 NI 82 N 0.390 NI 83 L 0.376 NI 84 L 0.380 NI 85 L 0.378 NI 86 L 0.374 NI 87 F 0.372 NI 88 V 0.368 NI 89 T 0.374 NI 90 V 0.436 NI 91 Y 0.346 NI 92 S 0.378 NI 93 H 0.380 NI 94 L 0.432 NI 95 L 0.432 NI 96 L 0.432 NI 97 V 0.418 NI 98 A 0.422 NI 99 A 0.452 NI 100 G 0.460 NI 101 L 0.490 NI 102 E 0.488 NI 103 A 0.514 I 104 P 0.436 NI 105 F 0.472 NI 106 L 0.464 NI 107 Y 0.374 NI 108 L 0.386 NI 109 Y 0.376 NI 110 A 0.386 NI 111 L 0.382 NI 112 V 0.408 NI 113 Y 0.378 NI 114 F 0.398 NI 115 L 0.404 NI 116 Q 0.400 NI 117 S 0.452 NI 118 I 0.380 NI 119 N 0.430 NI 120 F 0.408 NI 121 V 0.436 NI 122 R 0.370 NI 123 I 0.438 NI 124 I 0.510 I 125 M 0.502 I 126 R 0.414 NI 127 L 0.484 NI 128 W 0.434 NI 129 L 0.454 NI 130 C 0.442 NI 131 W 0.474 NI 132 K 0.550 I 133 C 0.466 NI 134 R 0.474 NI 135 S 0.520 I 136 K 0.526 I 137 N 0.514 I 138 P 0.500 NI 139 L 0.514 I 140 L 0.470 NI 141 Y 0.552 I 142 D 0.510 I 143 A 0.512 I 144 N 0.542 I 145 Y 0.498 NI 146 F 0.478 NI 147 L 0.416 NI 148 C 0.388 NI 149 W 0.468 NI 150 H 0.430 NI 151 T 0.462 NI 152 N 0.472 NI 153 C 0.506 I 154 Y 0.472 NI 155 D 0.526 I 156 Y 0.504 I 157 C 0.494 NI 158 I 0.526 I 159 P 0.560 I 160 Y 0.546 I 161 N 0.496 NI 162 S 0.496 NI 163 V 0.516 I 164 T 0.504 I 165 S 0.526 I 166 S 0.550 I 167 I 0.488 NI 168 V 0.484 NI 169 I 0.478 NI 170 T 0.476 NI 171 S 0.526 I 172 G 0.518 I 173 D 0.492 NI 174 G 0.544 I 175 T 0.502 I 176 T 0.482 NI 177 S 0.500 NI 178 P 0.476 NI 179 I 0.508 I 180 S 0.510 I 181 E 0.482 NI 182 H 0.512 I 183 D 0.492 NI 184 Y 0.540 I 185 Q 0.544 I 186 I 0.500 NI 187 G 0.502 I 188 G 0.506 I 189 Y 0.468 NI 190 T 0.520 I 191 E 0.468 NI 192 K 0.476 NI 193 W 0.492 NI 194 E 0.472 NI 195 S 0.502 I 196 G 0.468 NI 197 V 0.506 I 198 K 0.510 I 199 D 0.470 NI 200 C 0.532 I 201 V 0.468 NI 202 V 0.482 NI 203 L 0.468 NI 204 H 0.488 NI 205 S 0.500 NI 206 Y 0.490 NI 207 F 0.502 I 208 T 0.500 NI 209 S 0.528 I 210 D 0.544 I 211 Y 0.550 I 212 Y 0.506 I 213 Q 0.568 I 214 L 0.538 I 215 Y 0.534 I 216 S 0.548 I 217 T 0.508 I 218 Q 0.502 I 219 L 0.494 NI 220 S 0.520 I 221 T 0.516 I 222 D 0.480 NI 223 T 0.482 NI 224 G 0.496 NI 225 V 0.492 NI 226 E 0.526 I 227 H 0.560 I 228 V 0.518 I 229 T 0.540 I 230 F 0.532 I 231 F 0.480 NI 232 I 0.434 NI 233 Y 0.446 NI 234 N 0.452 NI 235 K 0.506 I 236 I 0.536 I 237 V 0.558 I 238 D 0.502 I 239 E 0.486 NI 240 P 0.452 NI 241 E 0.476 NI 242 E 0.458 NI 243 H 0.534 I 244 V 0.480 NI 245 Q 0.478 NI 246 I 0.428 NI 247 H 0.480 NI 248 T 0.460 NI 249 I 0.524 I 250 D 0.572 I 251 G 0.582 I 252 S 0.530 I 253 S 0.564 I 254 G 0.568 I 255 V 0.562 I 256 V 0.562 I 257 N 0.580 I 258 P 0.544 I 259 V 0.568 I 260 M 0.542 I 261 E 0.524 I 262 P 0.582 I 263 I 0.534 I 264 Y 0.550 I 265 D 0.532 I 266 E 0.550 I 267 P 0.566 I 268 T 0.554 I 269 T 0.542 I 270 T 0.562 I 271 T 0.556 I
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