VerAlign multiple sequence alignment comparison

Full Documentation (PDF 63K) VerAlign is a comparison program that assesses the quality of a test alignment against a reference version of the same alignments.

Paste in your reference alignment in MSF or FASTA format: Or Upload a reference MSF or FASTA file		Paste in your test alignment in MSF or FASTA format: Or Upload a test MSF or FASTA file
Enter a name for your job Select a scoring method: CS, SP and SPdist Score Column Score Sum-of-Pairs Score SPdist bin ranges (comma-separated) SPdist bin weights (comma-separated)

Interface written by Punto Bawono , Victor A. Simossis and Jaap Heringa