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DOMAINATION: domain prediction


DOMAINATION is a method to identify domains in a protein sequence from similarity searches using PSI-BLAST. The identified domains are used in individual PSI-BLAST searches to improve detection of distant homologous sequences. DOMAINATION iterates until no new domains are found.

Supply a protein sequence in FASTA format or enter a UniProt/RefSeq ID.

Documentation: introduction to DOMAINATION, including example output.

cog WSDL: SOAP interface available.

Paste in a protein sequence (FASTA format only):

or  upload a sequence:

or  supply a UniProt/RefSeq ID:

E-mail address (optional):


The DOMAINATION web server was developed by Bernd Brandt.

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